Rnw-ess-bugs.Rnw

<<coxph>>=

## reported by Terry Therneau
coxph <- function(formula, data, weights, subset, na.action,
                  init, control, ties= c("efron", "breslow", "exact"),
                  singular.ok =TRUE, robust=FALSE,
                  model=FALSE, x=FALSE, y=TRUE,  tt, method=ties, ...) {

  ties <- match.arg(ties)
  Call <- match.call()

  ... (20 lines omitted)

  timetrans <- attr(Terms, "specials")$tt
  if (length(timetrans)) {
    <<coxph-transform>>
  }

  ## next lines should not be ofsetted
  <<coxph-setup>>
    <<coxph-penal>>
      <<coxph-compute>>
        <<coxph-finish>>
}
@