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EuroSciPy 2019 - 3D image processing with scikit-image

Alexandre de Siqueira, [email protected]

BIDS @ University of California, Berkeley

  • Support material for the tutorial 3D image processing with scikit-image.

Open it using Binder: Binder

Inside Binder's structure, please point to /2019/euroscipy2019.

This tutorial will introduce how to analyze three dimensional stacked and volumetric images in Python, mainly using scikit-image. Here we will learn how to:

  • pre-process data using filtering, binarization and segmentation techniques.

  • inspect, count and measure attributes of objects and regions of interest in the data.

  • visualize large 3D data.

For more info:

To cite this material, please use the reference below (this is a Chicago-like style):

  • de Siqueira, Alexandre Fioravante. "Support material for the tutorial 3D image processing with scikit-image." EuroSciPy 2019. 2019, Sep 02. Access date: < ACCESS DATE >